Cottage Cheese Flatbread Pizza

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Cottage Cheese Flatbread Pizza is the weeknight pizza trick when you want something cheesy and satisfying without all the carbs! Blend, bake, top, melt, and you've got a crisp-edged, high-protein pizza you can customize a hundred ways.

227 CAL 7g CARBS 13g FAT 22g PROTEIN
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As much as I love my Two Ingredient Pizza Dough when I'm craving pizza, sometimes I want something quicker, lower in carbs, and higher in protein! That's why I love this cottage cheese flatbread pizza recipe. You blend cottage cheese and eggs into a batter, bake it into a flatbread-style crust, then add sauce, cheese, and pepperoni and melt everything together.

The crust comes out sturdy with golden edges, and it's surprisingly filling. It's also very forgiving, which is nice when you're hungry and not in the mood to make dough!

Ingredients for cottage cheese pepperoni pizza arranged in small bowls with eggs, mozzarella cheese, marinara sauce, Parmesan cheese, Italian seasoning, and fresh basil on a gray surface.

Before You Get Started

A few quick setup notes so the crust bakes up sturdy and not watery.

  • Pan choice: Use a 9×13 baking sheet lined with parchment paper, and fold the parchment up at the edges so the batter stays contained.
  • Cottage cheese texture: If your cottage cheese looks extra watery, drain it briefly so the crust sets up better. Watery cottage cheese can lead to a softer bake!
  • Blend until smooth: You want the mixture fully blended so it bakes evenly and doesn't feel lumpy.
  • Topping prep: Have your sauce, cheese, and pepperoni ready before the crust comes out of the oven. The second bake is quick!

How to Make Cottage Cheese Flatbread Pizza

This is a two-bake situation: crust first, toppings second.

1. Preheat And Prep The Pan

Preheat the oven to 350°F. Line a 9×13 baking sheet with parchment, folding up the edges.

Pro tip: A light spritz of cooking spray on the parchment helps with easy release.

2. Blend The Flatbread Batter

Add cottage cheese, eggs, Parmesan (if using), garlic powder, Italian seasoning, salt, and pepper to a blender or food processor. Blend until smooth.

Pro tip: Scrape down the sides once so the seasonings fully mix in.

3. Bake The Crust

Pour the mixture onto the lined baking sheet and spread into an even layer. Bake 30–35 minutes, until the edges are golden and the center looks set.

Pro tip: The center should look dry and set, not glossy or wet.

4. Cool Briefly, Then Top

Let the crust cool 2–3 minutes so it settles a bit. Spread on marinara, sprinkle mozzarella, and add turkey pepperoni.

Pro tip: If the crust is very puffy, that short cool-down helps it relax before topping.

5. Melt The Cheese

Return to the oven for 5–7 minutes, until the cheese is melted. Rest for a couple of minutes, then finish with fresh basil.

Pro tip: Letting it rest makes it easier to slice cleanly.

Air Fryer Method

If you've got an air fryer with a tray/basket big enough for a smaller portion, this works great.

Bake the crust in a parchment-lined air fryer-safe pan at 350°F, checking early since air fryers run hot. Add toppings and cook just until the cheese melts. (I usually treat this as a "make a smaller pizza" method, not a full 9×13 batch.)

Recipe Tips and Tricks

Helpful tweaks, upgrades, and "make it yours" ideas.

  • Sauce swap: Use Twenty Minute Homemade Marinara Sauce if you want a brighter, more homemade sauce vibe.
  • Spice it up: Add black pepper or red pepper flakes to the batter, or sprinkle flakes on top after baking.
  • Go veggie-heavy: Add quick-cook toppings like chopped spinach (squeezed dry), Easy Sautéed Mushrooms with Garlic Butter, or bell peppers (thinly sliced) so you don't add moisture that makes the pizza soggy.
  • Change the protein: Turkey pepperoni is classic, but chopped cooked chicken sausage or deli turkey also works.
  • Crispier top: Broil for 1–2 minutes at the end if you want browned cheese bubbles. Watch it closely.
  • Add extra protein: Top the pizza with sliced Easy Grilled Chicken Breasts or Slow Cooker Italian Shredded Beef for an easy protein boost!
  • BBQ chicken twist: Swap marinara for BBQ sauce, use mozzarella (or a little cheddar), and top with chopped Crispy BBQ Baked Chicken Thighs for a fun BBQ chicken pizza vibe!

Serving Ideas

A few easy sides that make this feel like a full dinner.

Overhead view of sliced cottage cheese crust pepperoni pizza topped with melted mozzarella, turkey pepperoni, and fresh basil on parchment paper.

Storage & Reheating

Here's how to keep the slices tasty.

  • Storage: Store slices in an airtight container in the fridge for up to 3 days.
  • Freezer: Freeze slices on a sheet pan, then transfer to a freezer bag for up to 2 months.
  • Reheating: Reheat in the oven or air fryer until hot and the edges crisp back up. The microwave works, but the crust stays softer.

Frequently Asked Questions

Here are some of the most commonly asked questions about this recipe:

Yes, but thickness changes the bake. A smaller pan makes the crust thicker and it will need a longer first bake to fully set. If you go larger, the crust will be thinner and may bake faster, so start checking early and pull it once the center looks fully set and the edges are golden.

Nope, eggs can puff as they bake. Letting the crust cool for a couple of minutes before topping helps it settle back down so it slices better.

Wet toppings are usually the culprit. Use low-moisture mozzarella, go lighter on sauce, and cook or drain watery veggies before adding them.

Yes. Bake the crust, cool completely, then refrigerate. Add sauce and toppings and do the quick melt bake when you're ready to eat (it's a great "prep now, pizza later" move).

Close-up of cottage cheese crust pepperoni pizza with a slice removed, showing melted mozzarella, marinara sauce, turkey pepperoni, and fresh basil garnish.
The Recipe
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Cottage Cheese Flatbread Pizza

227 CAL 7g CARBS 13g FAT 22g PROTEIN
PREP TIME: 10 Min
COOK TIME: 35 Min
TOTAL TIME: 45 Min
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Ingredients

US METRICS
  • 1 cup low fat cottage cheese (2% or full fat)
  • 2 eggs
  • 3 tbsp Parmesan cheese (optional)
  • 1 tsp garlic powder
  • 1/2 cup marinara sauce (more if needed)
  • 3/4 cup shredded mozzarella cheese
  • 1/2 cup turkey pepperoni
  • 2 tbsp fresh basil

Instructions

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1

Preheat the oven to 350 degrees. Line a baking sheet (9 X 13) with parchment paper, folding at the edges. Add the cottage cheese, eggs, parmesan cheese, garlic powder, Italian seasoning, salt, and pepper to a blender or food processor. You can also add black pepper and/or red pepper flakes. Blend until smooth.

Cottage cheese, eggs, Parmesan cheese, garlic powder, and Italian seasoning added to a blender before being mixed into a pizza crust batter.
2

Pour the mixture into the lined baking sheet. Use a spatula or gently tilt the pan so it is in an even layer.

Blended cottage cheese pizza crust mixture spread into a round shape on a parchment-lined baking sheet before baking.
3

Bake for 30-35 minutes until it is golden brown on the edges.

Baked cottage cheese pizza crust on a parchment-lined baking sheet, golden brown with lightly crisped edges and ready for toppings.
4

Carefully remove from the oven and let cool 2-3 minutes so it gets less puffy. Then spread with the pizza sauce, sprinkle cheese over top, and add the pepperoni.

Prepared cottage cheese pizza crust topped with marinara sauce, shredded mozzarella cheese, and turkey pepperoni before the final bake.
5

Return the pizza to the oven for 5-7 minutes until cheese is melted. Let cool for a couple of minutes. Add fresh basil and enjoy.

Freshly baked cottage cheese pepperoni pizza with melted cheese and crispy pepperoni on a parchment-lined baking sheet.

Equipment

This equipment section may contain affiliate links to products we recommend.
Nutritional Facts
Serving Size: 1/4 pizza
Amount Per Serving
Calories 227
Calories from Fat 112
% Daily Value *
Total Fat 13g
19%
Saturated Fat 6g
30%
Monounsaturated Fat 1g
0%
Polyunsaturated Fat 1g
0%
Cholesterol 139mg
47%
Sodium 795mg
35%
Total Carbohydrate 7g
2%
Dietary Fiber 1g
4%
Sugars 4g
Protein 22g

* Percent Daily Values are based on a 2,000 calorie diet. Your daily values may be higher or lower depending on your calorie needs.

The Nutritional Values provided are estimates only and may vary based on the preparation method.

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About the author Meet Kristen McCaffrey
Hi, I’m the cookbook author, recipe developer, and food enthusiast behind Slender Kitchen. I am obsessed with making healthy food that is easy to prepare and absolutely delicious. Meal planning is my secret weapon and I hope I can make meal time easier for you with our tried and tested recipes and foolproof meal plans. Learn More
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