Broccoli Cheddar Egg Muffins

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Broccoli Cheddar Egg Muffins are packed with protein for a healthy, portable breakfast or snack that will keep you going all morning.

147 CAL 3g CARBS 8g FAT 16g PROTEIN 2

These easy Egg Muffins with broccoli and cheddar cheese are a great make-ahead breakfast, lunch, and snack option. They are freezer friendly and can be eaten on their own or used for a quick breakfast sandwich.

Egg Muffin fanatics will also love these Southwest Black Bean Egg Muffins and Ham and Cheese Egg Muffins.

These Broccoli Cheese Egg Muffins have been part of our breakfast routine for years now and make the best on-the-go healthy breakfast. I make all kinds of egg muffins but recently realized I haven't shared the one that I make most often. These tasty egg muffins packed with broccoli, cheddar cheese, and green onions. I love having a batch in the fridge for a quick protein-packed snack or breakfast.

The other thing I love about these muffins is how easy they are to make. Whisk together some eggs, toss in some cooked broccoli and cheese, and pop them in the oven for about 12 minutes. That's it.

Egg muffin with broccoli pieces, green onions, and cheddar cheese on a white plate.

They really couldn't get easier and are a great recipe to make with your kids since nothing is more fun than cracking eggs and whisking. It's also a great way to get your kids to eat broccoli. Something about transforming it into a portable muffin makes all the difference.

Since two of these muffins usually aren't quite enough for me at breakfast time, I usually pair them with a bagel thin, English muffin, or a quick piece of avocado toast. There is always fruit and coffee.  If you want a lower carb option, you can always serve them with some lean turkey sausage or bacon.

How to Make Egg Muffins

Once you start making these mini egg frittatas, you won't be able to stop. The ideas and combinations are endless and it's a great recipe for using up any veggies that are about to go bad in the fridge. Here's a good base recipe to follow:

  • 9 eggs
  • 1/4 cup milk (I use skim, but anything will work)
  • 1-1.5 cups toppings - veggies, beans, cooked proteins (make sure veggies and proteins are cooked. For frozen, defrost first and squeeze out any excess moisture)
  • 1/2-3/4 cup cheese - I like to include most of it in the egg mixture to add moisture and then save a little to sprinkle on top
  • Cook in a preheated 350 degree oven for 18-22 minutes until cooked through and puffy. They will get really puffy during baking but then fall down as they cool. 

Recipe Ideas for Broccoli Egg Muffins?

Consider the recipe a blank canvas and try out all your favorite mix-ins:

  • Want more protein? Add some chopped cooked bacon, cooked ground turkey sausage, or cooked lentils to the mix. Personally, I love these with crumbled turkey sausage since the combination of sausage and broccoli is one of my all-time favorites.
  • Craving more veggies? You can pretty much use any vegetables you like in this recipe. Sometimes I swap out half of the broccoli for spinach or diced cooked zucchini. I also love adding a chopped roasted red pepper to the mix or some chopped cooked cauliflower.  If broccoli isn't your favorite, swap it all out for another veggie you like.
  • Cheese! One of the fastest ways to switch up the flavor in these muffins is to swap in a different cheese. Feta or goat cheese brings a more sophisticated flavor to the muffins while something like mozzarella or jack cheese is milder. You can also add cottage cheese to create a really moist, dense muffin.
  • Fresh herbs are the last thing I would recommend adding to mix up the flavor profile. Sometimes I take the simple route and add some chopped parsley but thyme, chives, and oregano are all delicious as well.

Muffin tin filled with baked broccoli cheese egg muffins.

How long do egg muffins last in the fridge?

Generally speaking, egg muffins will stay good in the fridge for 4-5 days. Make sure to keep them in an airtight container. It also helps if you let them fully cool before placing them in the fridge.

To reheat, I like to wrap the muffins in a moist paper towel and then reheat them in the microwave for 30-45 seconds. This prevents the muffin from drying out. They are also delicious cold and room temperature and make a great option for school lunches.

Can you freeze egg muffins? 

These broccoli egg muffins are a great recipe for meal prep and to have in the freezer for quick breakfasts, snacks, and meals. However, there are a few tricks to making sure they still taste delicious after freezing.

  1. Make sure to let them fully cool. Then place the muffins on a baking sheet and place them in the freezer. Let them freeze for about 3 hours until the outside is frozen. Then place them in a freezer-safe container or individually wrap them. 
  2. For the best results, let the egg muffins defrost overnight in the fridge. Then in the morning, wrap them in a moist paper towel and microwave for 30-45 seconds or until heated through.
  3. To reheat from frozen, wrap in a moist paper towel and microwave for 1-1.5 minutes until heated through.
  4. Pro tip: If you have time, reheat these in the toaster oven. They will get crispy on the outside.

Frequently Asked Questions

Here are the most common questions about making egg muffins.

Egg muffins are healthy, portable breakfasts or lunches that are packed with protein, nutrients, and vegetables. Make them with any vegetables you like to create an easy healthy option. 

The most common reason egg muffins collapse is that they are cooked at too high of a temperature, causing the egg to puff up too much. To counteract this, make sure to cook the egg muffins at 350 degrees.

Please note, all egg muffins will deflate slightly after being cooked as they cool. 

When baking egg muffins at 350 degrees, they will take about 15-20 minutes in the oven. They are ready when they are slightly puffed up and cooked through. 

Mini egg, broccoli, and cheddar cheese frittatas on a white board with green onions.
The Recipe
Broccoli Cheddar Egg Muffins with broccoli florets , green onions, and shredded cheese.

Broccoli Cheddar Egg Muffins

147 CAL 3g CARBS 8g FAT 16g PROTEIN 2
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  • 9 eggs
  • 1/4 cup skim milk
  • 1/2 tbsp Dijon mustard (optional)
  • Salt and pepper to taste
  • 1.5 cups broccoli, steamed and chopped (or defrosted frozen)
  • 3/4 cup reduced fat shredded cheddar cheese
  • 2 green onions, chopped

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Preheat the oven to 350 degrees. Whisk together the eggs, milk, mustard, salt, and pepper. Stir in the broccoli, green onions, and cheddar cheese.

Eggs whisked in a bowl with broccoli, green onions, and cheddar cheese.

Spray a standard muffin tin with cooking spray or line with paper liners. Pour in the egg mixture and bake for 18-22 minutes until cooked through and puffy.

Egg muffins with broccoli and cheese in a muffin tin before baking


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Nutritional Facts
Serving Size: 2 muffins
Amount Per Serving
Calories 147
Calories from Fat 69
% Daily Value *
Total Fat 8g
Saturated Fat 3g
Monounsaturated Fat 0g
Polyunsaturated Fat 0g
Cholesterol 252mg
Sodium 272mg
Total Carbohydrate 3g
Dietary Fiber 1g
Sugars 1g
Protein 16g

* Percent Daily Values are based on a 2,000 calorie diet. Your daily values may be higher or lower depending on your calorie needs.

The Nutritional Values provided are estimates only and may vary based on the preparation method.

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About the author Meet Kristen McCaffrey
Hi, I’m the cookbook author, recipe developer, and food enthusiast behind Slender Kitchen. I am obsessed with making healthy food that is easy to prepare and absolutely delicious. Meal planning is my secret weapon and I hope I can make meal time easier for you with our tried and tested recipes and foolproof meal plans. Learn More
On Broccoli Cheddar Egg Muffins
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February 22, 2023 - 17:42
Add a Rating:
I especially liked the black pepper and mustard powder addition. So many broc-cheese things are blah. These were very good!
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April 16, 2022 - 05:25
Can I freeze these ?
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May 10, 2022 - 17:14
These are great for the freezer. There are full freezer instructions plus info on reheating in the post.
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May 9, 2020 - 14:04
Can’t these be prepared the night before and baked the following morning?
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May 10, 2022 - 17:15
I haven't tried that before so I am not sure how it would work.
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